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Gene : NAC001 A. thaliana

Gene ID  ? AT1G01010
Brief Description  NAC domain containing protein 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? NAC domain containing protein 1 (NAC001); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 69 (TAIR:AT4G01550.1).  Source: TAIR, Jun 30, 2015.
Name  ? NAC domain containing protein 1
  • synonyms:
  • ANAC001,
  • NAC domain containing protein 1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G01010 0.5kb upstream 0.5kb upstream 2769   true Chr1: 3131-5899
AT1G01010 0.5kb upstream 0.5kb upstream 500   false Chr1: 3131-3630
AT1G01010 0.5kb downstream 0.5kb downstream 2769   true Chr1: 3631-6399
AT1G01010 0.5kb downstream 0.5kb downstream 500   false Chr1: 5900-6399
AT1G01010 1.0kb upstream 1.0kb upstream 3269   true Chr1: 2631-5899
AT1G01010 1.0kb upstream 1.0kb upstream 1000   false Chr1: 2631-3630
AT1G01010 1.0kb downstream 1.0kb downstream 3269   true Chr1: 3631-6899
AT1G01010 1.0kb downstream 1.0kb downstream 1000   false Chr1: 5900-6899
AT1G01010 3.0kb upstream 3.0kb upstream 5269   true Chr1: 631-5899
AT1G01010 3.0kb upstream 3.0kb upstream 3000   false Chr1: 631-3630
AT1G01010 3.0kb downstream 3.0kb downstream 5269   true Chr1: 3631-8899
AT1G01010 3.0kb downstream 3.0kb downstream 3000   false Chr1: 5900-8899

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139