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mRNA : DCL1 A. thaliana

DB identifier  AT1G01040.1
Name  dicer-like 1
Confidence Class  ? 2
Confidence Rating  ? ****
Curator Summary  ? Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.  Source: TAIR, Jun 30, 2015.
Computational Description  ? dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Dicer double-stranded RNA-binding fold (InterPro:IPR005034); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.2).  Source: TAIR, Jun 30, 2015.
Brief Description  dicer-like 1  Source: Araport11 (06/2016).
Secondary Identifier  gene:2200959

Publication Counts Displayer

14 Synonyms

Value
ASU1
SHORT INTEGUMENTS 1
SUS1
DICER-LIKE 1
ATDCL1
SIN1
CAF
CARPEL FACTORY
EMBRYO DEFECTIVE 76
EMB76
ABNORMAL SUSPENSOR 1
EMB60
SUSPENSOR 1
EMBRYO DEFECTIVE 60

Genomics

Sequence Feature Displayer

Gene Structure Displayer

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Overlapping Features Displayer

1 Five Prime UT Rs

DB identifier Length Chromosome Location
AT1G01040:five_prime_UTR:1 398   Chr1: 23121-23518

1 Gene

Gene ID Symbol Brief Description Is Obsolete?
AT1G01040 DCL1 dicer-like 1 false

1 Three Prime UT Rs

DB identifier Length Chromosome Location
AT1G01040:three_prime_UTR:2 148   Chr1: 31080-31227

Expression

RNA-seq Expression



 

Other

2 Data Sets

Name Description Version
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)

0 Ontology Annotations

1 Protein

DB identifier Length Molecular Weight
DCL1_ARATH 1909   213574