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mRNA : DCL1 A. thaliana

DB identifier  AT1G01040.2
Name  dicer-like 1
Confidence Class  ? 2
Confidence Rating  ? ****
Curator Summary  ? Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.  Source: TAIR, Jun 30, 2015.
Computational Description  ? dicer-like 1 (DCL1); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 3 (TAIR:AT3G43920.1).  Source: TAIR, Jun 30, 2015.
Brief Description  dicer-like 1  Source: Araport11 (06/2016).
Secondary Identifier  gene:6530296038

Publication Counts Displayer

14 Synonyms

Value
ABNORMAL SUSPENSOR 1
CARPEL FACTORY
EMB76
SIN1
EMBRYO DEFECTIVE 60
SUSPENSOR 1
ASU1
DICER-LIKE 1
CAF
SHORT INTEGUMENTS 1
ATDCL1
SUS1
EMB60
EMBRYO DEFECTIVE 76

Genomics

Sequence Feature Displayer

Gene Structure Displayer

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Overlapping Features Displayer

1 Five Prime UT Rs

DB identifier Length Chromosome Location
AT1G01040:five_prime_UTR:2 103   Chr1: 23416-23518

1 Gene

Gene ID Symbol Brief Description Is Obsolete?
AT1G01040 DCL1 dicer-like 1 false

1 Three Prime UT Rs

DB identifier Length Chromosome Location
AT1G01040:three_prime_UTR:1 41   Chr1: 31080-31120

Expression

RNA-seq Expression



 

Other

2 Data Sets

Name Description Version
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)

0 Ontology Annotations

1 Protein

DB identifier Length Molecular Weight
F4HQG6_ARATH 1910   213673