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mRNA : LHY A. thaliana

DB identifier  AT1G01060.3
Name  LATE ELONGATED HYPOCOTYL
Confidence Class  ? 2
Confidence Rating  ? ****
Curator Summary  ? LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1  Source: TAIR, Jun 30, 2015.
Computational Description  ? LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1).  Source: TAIR, Jun 30, 2015.
Brief Description  Homeodomain-like superfamily protein  Source: Araport11 (06/2016).
Secondary Identifier  gene:1005715162

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2 Synonyms

Value
LATE ELONGATED HYPOCOTYL 1
LHY1

Genomics

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3 Five Prime UT Rs

DB identifier Length Chromosome Location
AT1G01060:five_prime_UTR:4 189   Chr1: 37569-37757
AT1G01060:five_prime_UTR:10 142   Chr1: 37062-37203
AT1G01060:five_prime_UTR:7 26   Chr1: 37373-37398

1 Gene

Gene ID Symbol Brief Description Is Obsolete?
AT1G01060 LHY Homeodomain-like superfamily protein false

2 Three Prime UT Rs

DB identifier Length Chromosome Location
AT1G01060:three_prime_UTR:5 211   Chr1: 33379-33589
AT1G01060:three_prime_UTR:1 11   Chr1: 33981-33991

Expression

RNA-seq Expression



 

Other

2 Data Sets

Name Description Version
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)

0 Ontology Annotations

1 Protein

DB identifier Length Molecular Weight
LHY_ARATH 645   70438