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Gene : AT1G01250 A. thaliana

Gene ID  ? AT1G01250
Brief Description  Integrase-type DNA-binding superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G01250 0.5kb upstream 0.5kb upstream 1391   true Chr1: 104440-105830
AT1G01250 0.5kb upstream 0.5kb upstream 500   false Chr1: 105331-105830
AT1G01250 0.5kb downstream 0.5kb downstream 1391   true Chr1: 103940-105330
AT1G01250 0.5kb downstream 0.5kb downstream 500   false Chr1: 103940-104439
AT1G01250 1.0kb upstream 1.0kb upstream 1891   true Chr1: 104440-106330
AT1G01250 1.0kb upstream 1.0kb upstream 1000   false Chr1: 105331-106330
AT1G01250 1.0kb downstream 1.0kb downstream 1891   true Chr1: 103440-105330
AT1G01250 1.0kb downstream 1.0kb downstream 1000   false Chr1: 103440-104439
AT1G01250 3.0kb upstream 3.0kb upstream 3891   true Chr1: 104440-108330
AT1G01250 3.0kb upstream 3.0kb upstream 3000   false Chr1: 105331-108330
AT1G01250 3.0kb downstream 3.0kb downstream 3891   true Chr1: 101440-105330
AT1G01250 3.0kb downstream 3.0kb downstream 3000   false Chr1: 101440-104439

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0