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Gene : AGL28 A. thaliana

Gene ID  ? AT1G01530
Brief Description  AGAMOUS-like 28  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? AGAMOUS-like 28 (AGL28); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, embryo, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 23 (TAIR:AT1G65360.1).  Source: TAIR, Jun 30, 2015.
Name  ? AGAMOUS-like 28

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AGL28 plays a role in the vegetative phase in Arabidopsis and is a positive regulator of known floral promoters within the autonomous pathway [AGAMOUS-LIKE 28] [AGL28] 16899218


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G01530 0.5kb upstream 0.5kb upstream 1537   true Chr1: 192634-194170
AT1G01530 0.5kb upstream 0.5kb upstream 500   false Chr1: 193671-194170
AT1G01530 0.5kb downstream 0.5kb downstream 1537   true Chr1: 192134-193670
AT1G01530 0.5kb downstream 0.5kb downstream 500   false Chr1: 192134-192633
AT1G01530 1.0kb upstream 1.0kb upstream 2037   true Chr1: 192634-194670
AT1G01530 1.0kb upstream 1.0kb upstream 1000   false Chr1: 193671-194670
AT1G01530 1.0kb downstream 1.0kb downstream 2037   true Chr1: 191634-193670
AT1G01530 1.0kb downstream 1.0kb downstream 1000   false Chr1: 191634-192633
AT1G01530 3.0kb upstream 3.0kb upstream 4037   true Chr1: 192634-196670
AT1G01530 3.0kb upstream 3.0kb upstream 3000   false Chr1: 193671-196670
AT1G01530 3.0kb downstream 3.0kb downstream 4037   true Chr1: 189634-193670
AT1G01530 3.0kb downstream 3.0kb downstream 3000   false Chr1: 189634-192633


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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139