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Gene : ABCB11 A. thaliana

Gene ID  ? AT1G02520
Brief Description  P-glycoprotein 11  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? P-glycoprotein 11 (PGP11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes an ATP-binding cassette (ABC) transporter. Expressed in the vascular tissue of primary stem.  Source: TAIR, Jun 30, 2015.
Name  ? ATP-binding cassette B11
  • synonyms:
  • PGP11,
  • MDR8,
  • P-glycoprotein 11,
  • multi-drug resistance 8

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G02520 0.5kb upstream 0.5kb upstream 6034   true Chr1: 523036-529069
AT1G02520 0.5kb upstream 0.5kb upstream 500   false Chr1: 523036-523535
AT1G02520 0.5kb downstream 0.5kb downstream 6034   true Chr1: 523536-529569
AT1G02520 0.5kb downstream 0.5kb downstream 500   false Chr1: 529070-529569
AT1G02520 1.0kb upstream 1.0kb upstream 6534   true Chr1: 522536-529069
AT1G02520 1.0kb upstream 1.0kb upstream 1000   false Chr1: 522536-523535
AT1G02520 1.0kb downstream 1.0kb downstream 6534   true Chr1: 523536-530069
AT1G02520 1.0kb downstream 1.0kb downstream 1000   false Chr1: 529070-530069
AT1G02520 3.0kb upstream 3.0kb upstream 8534   true Chr1: 520536-529069
AT1G02520 3.0kb upstream 3.0kb upstream 3000   false Chr1: 520536-523535
AT1G02520 3.0kb downstream 3.0kb downstream 8534   true Chr1: 523536-532069
AT1G02520 3.0kb downstream 3.0kb downstream 3000   false Chr1: 529070-532069

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1 Pathways

Data Source: KEGG

Identifier Name
02010 ABC transporters

Gene --> Ontology term

Gene --> Pathways


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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139