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Gene : POR C A. thaliana

Gene ID  ? AT1G03630
Brief Description  protochlorophyllide oxidoreductase C  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? protochlorophyllide oxidoreductase C (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Light-dependent protochlorophyllide reductase (InterPro:IPR005979), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.  Source: TAIR, Jun 30, 2015.
Name  ? protochlorophyllide oxidoreductase C
  • synonyms:
  • PORC

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
In response to illumination, light-dependent chlorophyll production, thylakoid stacking and photomorphogenesis are also restored in PORA-overexpressing porB-1 porC-1 seedlings and adult plants. 20012672
reconstituted Pchlide-POR-NADPH complexes showed fluorescence maxima at 77 K 25659137

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G03630 0.5kb upstream 0.5kb upstream 2628   true Chr1: 907023-909650
AT1G03630 0.5kb upstream 0.5kb upstream 500   false Chr1: 907023-907522
AT1G03630 0.5kb downstream 0.5kb downstream 2628   true Chr1: 907523-910150
AT1G03630 0.5kb downstream 0.5kb downstream 500   false Chr1: 909651-910150
AT1G03630 1.0kb upstream 1.0kb upstream 3128   true Chr1: 906523-909650
AT1G03630 1.0kb upstream 1.0kb upstream 1000   false Chr1: 906523-907522
AT1G03630 1.0kb downstream 1.0kb downstream 3128   true Chr1: 907523-910650
AT1G03630 1.0kb downstream 1.0kb downstream 1000   false Chr1: 909651-910650
AT1G03630 3.0kb upstream 3.0kb upstream 5128   true Chr1: 904523-909650
AT1G03630 3.0kb upstream 3.0kb upstream 3000   false Chr1: 904523-907522
AT1G03630 3.0kb downstream 3.0kb downstream 5128   true Chr1: 907523-912650
AT1G03630 3.0kb downstream 3.0kb downstream 3000   false Chr1: 909651-912650

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Function

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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00860 Porphyrin and chlorophyll metabolism

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Expression

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139