help  | faq  | software  | ARAPORT

Gene : IAA10 A. thaliana

Gene ID  ? AT1G04100
Brief Description  indoleacetic acid-induced protein 10  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? indoleacetic acid-induced protein 10 (IAA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 11 (TAIR:AT4G28640.3).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Auxin induced gene, IAA10 (IAA10).  Source: TAIR, Jun 30, 2015.
Name  ? indoleacetic acid-induced protein 10

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI


Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G04100 0.5kb upstream 0.5kb upstream 2240   true Chr1: 1058970-1061209
AT1G04100 0.5kb upstream 0.5kb upstream 500   false Chr1: 1058970-1059469
AT1G04100 0.5kb downstream 0.5kb downstream 2240   true Chr1: 1059470-1061709
AT1G04100 0.5kb downstream 0.5kb downstream 500   false Chr1: 1061210-1061709
AT1G04100 1.0kb upstream 1.0kb upstream 2740   true Chr1: 1058470-1061209
AT1G04100 1.0kb upstream 1.0kb upstream 1000   false Chr1: 1058470-1059469
AT1G04100 1.0kb downstream 1.0kb downstream 2740   true Chr1: 1059470-1062209
AT1G04100 1.0kb downstream 1.0kb downstream 1000   false Chr1: 1061210-1062209
AT1G04100 3.0kb upstream 3.0kb upstream 4740   true Chr1: 1056470-1061209
AT1G04100 3.0kb upstream 3.0kb upstream 3000   false Chr1: 1056470-1059469
AT1G04100 3.0kb downstream 3.0kb downstream 4740   true Chr1: 1059470-1064209
AT1G04100 3.0kb downstream 3.0kb downstream 3000   false Chr1: 1061210-1064209


Protein Displayer


Gene Ontology Displayer

1 Pathways

Data Source: KEGG

Identifier Name
04075 Plant hormone signal transduction

Gene --> Ontology term

Gene --> Pathways


Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression


Save / Export






Cytoscape Network Displayer


Homologue Displayer

Phytomine Ortholog Displayer


Alelle Table Displayer

Stock Gene Table Displayer



11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139