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Gene : IAA12 A. thaliana

Gene ID  ? AT1G04550
Brief Description  AUX/IAA transcriptional regulator family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? indole-3-acetic acid inducible 12 (IAA12); FUNCTIONS IN: transcription repressor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.3).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem  Source: TAIR, Jun 30, 2015.
Name  ? indole-3-acetic acid inducible 12
  • synonyms:
  • BODENLOS,
  • BDL

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
TOPLESS (TPL) can interact with IAA12/BODENLOS through an ETHYLENE RESPONSE FACTOR-associated amphiphilic repression motif; study shows TPL is a transcriptional co-repressor & furthers understanding of how auxin regulates transcription during development 18258861
HB5 negatively regulates BDL expression. 23682118

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G04550 0.5kb upstream 0.5kb upstream 2364   true Chr1: 1239794-1242157
AT1G04550 0.5kb upstream 0.5kb upstream 500   false Chr1: 1239794-1240293
AT1G04550 0.5kb downstream 0.5kb downstream 2364   true Chr1: 1240294-1242657
AT1G04550 0.5kb downstream 0.5kb downstream 500   false Chr1: 1242158-1242657
AT1G04550 1.0kb upstream 1.0kb upstream 2864   true Chr1: 1239294-1242157
AT1G04550 1.0kb upstream 1.0kb upstream 1000   false Chr1: 1239294-1240293
AT1G04550 1.0kb downstream 1.0kb downstream 2864   true Chr1: 1240294-1243157
AT1G04550 1.0kb downstream 1.0kb downstream 1000   false Chr1: 1242158-1243157
AT1G04550 3.0kb upstream 3.0kb upstream 4864   true Chr1: 1237294-1242157
AT1G04550 3.0kb upstream 3.0kb upstream 3000   false Chr1: 1237294-1240293
AT1G04550 3.0kb downstream 3.0kb downstream 4864   true Chr1: 1240294-1245157
AT1G04550 3.0kb downstream 3.0kb downstream 3000   false Chr1: 1242158-1245157

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
04075 Plant hormone signal transduction

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Interactions

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Other

12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139