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Gene : LIP2 A. thaliana

Gene ID  ? AT1G04640
Brief Description  lipoyltransferase 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? lipoyltransferase 2 (LIP2); CONTAINS InterPro DOMAIN/s: Octanoyltransferase (InterPro:IPR000544), Octanoyltransferase, conserved site (InterPro:IPR020605), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT4G31050.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Lipoyltransferase, located in mitochondria but not found in chloroplasts  Source: TAIR, Jun 30, 2015.
Name  ? lipoyltransferase 2

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G04640 0.5kb upstream 0.5kb upstream 1876   true Chr1: 1291523-1293398
AT1G04640 0.5kb upstream 0.5kb upstream 500   false Chr1: 1291523-1292022
AT1G04640 0.5kb downstream 0.5kb downstream 1876   true Chr1: 1292023-1293898
AT1G04640 0.5kb downstream 0.5kb downstream 500   false Chr1: 1293399-1293898
AT1G04640 1.0kb upstream 1.0kb upstream 2376   true Chr1: 1291023-1293398
AT1G04640 1.0kb upstream 1.0kb upstream 1000   false Chr1: 1291023-1292022
AT1G04640 1.0kb downstream 1.0kb downstream 2376   true Chr1: 1292023-1294398
AT1G04640 1.0kb downstream 1.0kb downstream 1000   false Chr1: 1293399-1294398
AT1G04640 3.0kb upstream 3.0kb upstream 4376   true Chr1: 1289023-1293398
AT1G04640 3.0kb upstream 3.0kb upstream 3000   false Chr1: 1289023-1292022
AT1G04640 3.0kb downstream 3.0kb downstream 4376   true Chr1: 1292023-1296398
AT1G04640 3.0kb downstream 3.0kb downstream 3000   false Chr1: 1293399-1296398

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2 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00785 Lipoic acid metabolism

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Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0