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Gene : AT1G04850 A. thaliana

Gene ID  ? AT1G04850
Brief Description  ubiquitin-associated (UBA)/TS-N domain-containing protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567), Zinc finger, C2H2-type (InterPro:IPR007087), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48690.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G04850 0.5kb upstream 0.5kb upstream 4334   true Chr1: 1365107-1369440
AT1G04850 0.5kb upstream 0.5kb upstream 500   false Chr1: 1368941-1369440
AT1G04850 0.5kb downstream 0.5kb downstream 4334   true Chr1: 1364607-1368940
AT1G04850 0.5kb downstream 0.5kb downstream 500   false Chr1: 1364607-1365106
AT1G04850 1.0kb upstream 1.0kb upstream 4834   true Chr1: 1365107-1369940
AT1G04850 1.0kb upstream 1.0kb upstream 1000   false Chr1: 1368941-1369940
AT1G04850 1.0kb downstream 1.0kb downstream 4834   true Chr1: 1364107-1368940
AT1G04850 1.0kb downstream 1.0kb downstream 1000   false Chr1: 1364107-1365106
AT1G04850 3.0kb upstream 3.0kb upstream 6834   true Chr1: 1365107-1371940
AT1G04850 3.0kb upstream 3.0kb upstream 3000   false Chr1: 1368941-1371940
AT1G04850 3.0kb downstream 3.0kb downstream 6834   true Chr1: 1362107-1368940
AT1G04850 3.0kb downstream 3.0kb downstream 3000   false Chr1: 1362107-1365106

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139