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Gene : MEF3 A. thaliana

Gene ID  ? AT1G06140
Brief Description  Pentatricopeptide repeat (PPR) superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes MEF3 (mitochondrial editing factor 3), a PPR (pentatricopeptide repeat) protein of the E domain subclass. Functions in mitochondrial RNA editing.  Source: TAIR, Jun 30, 2015.
Name  ? mitochondrial editing factor 3

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
The nuclear gene MEF3 complements mitochondrial RNA editing defects at the atp4-89 site 22186180

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G06140 0.5kb upstream 0.5kb upstream 2726   true Chr1: 1864274-1866999
AT1G06140 0.5kb upstream 0.5kb upstream 500   false Chr1: 1864274-1864773
AT1G06140 0.5kb downstream 0.5kb downstream 2726   true Chr1: 1864774-1867499
AT1G06140 0.5kb downstream 0.5kb downstream 500   false Chr1: 1867000-1867499
AT1G06140 1.0kb upstream 1.0kb upstream 3226   true Chr1: 1863774-1866999
AT1G06140 1.0kb upstream 1.0kb upstream 1000   false Chr1: 1863774-1864773
AT1G06140 1.0kb downstream 1.0kb downstream 3226   true Chr1: 1864774-1867999
AT1G06140 1.0kb downstream 1.0kb downstream 1000   false Chr1: 1867000-1867999
AT1G06140 3.0kb upstream 3.0kb upstream 5226   true Chr1: 1861774-1866999
AT1G06140 3.0kb upstream 3.0kb upstream 3000   false Chr1: 1861774-1864773
AT1G06140 3.0kb downstream 3.0kb downstream 5226   true Chr1: 1864774-1869999
AT1G06140 3.0kb downstream 3.0kb downstream 3000   false Chr1: 1867000-1869999

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Array Expression

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Interactions

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016