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Gene : AT1G07160 A. thaliana

Gene ID  ? AT1G07160
Brief Description  Protein phosphatase 2C family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: chloroplast, protein serine/threonine phosphatase complex; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G30020.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G07160 0.5kb upstream 0.5kb upstream 2420   true Chr1: 2197854-2200273
AT1G07160 0.5kb upstream 0.5kb upstream 500   false Chr1: 2199774-2200273
AT1G07160 0.5kb downstream 0.5kb downstream 2420   true Chr1: 2197354-2199773
AT1G07160 0.5kb downstream 0.5kb downstream 500   false Chr1: 2197354-2197853
AT1G07160 1.0kb upstream 1.0kb upstream 2920   true Chr1: 2197854-2200773
AT1G07160 1.0kb upstream 1.0kb upstream 1000   false Chr1: 2199774-2200773
AT1G07160 1.0kb downstream 1.0kb downstream 2920   true Chr1: 2196854-2199773
AT1G07160 1.0kb downstream 1.0kb downstream 1000   false Chr1: 2196854-2197853
AT1G07160 3.0kb upstream 3.0kb upstream 4920   true Chr1: 2197854-2202773
AT1G07160 3.0kb upstream 3.0kb upstream 3000   false Chr1: 2199774-2202773
AT1G07160 3.0kb downstream 3.0kb downstream 4920   true Chr1: 2194854-2199773
AT1G07160 3.0kb downstream 3.0kb downstream 3000   false Chr1: 2194854-2197853

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0 Pathways

Data Source: KEGG

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139