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Gene : ACA5 A. thaliana

Gene ID  ? AT1G08065
Brief Description  alpha carbonic anhydrase 5  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? alpha carbonic anhydrase 5 (ACA5); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: one-carbon metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 7 (TAIR:AT1G08080.1).  Source: TAIR, Jun 30, 2015.
Name  ? alpha carbonic anhydrase 5
  • synonyms:
  • ALPHA CARBONIC ANHYDRASE 5,
  • ATACA5

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G08065 0.5kb upstream 0.5kb upstream 2308   true Chr1: 2511647-2513954
AT1G08065 0.5kb upstream 0.5kb upstream 500   false Chr1: 2513455-2513954
AT1G08065 0.5kb downstream 0.5kb downstream 2308   true Chr1: 2511147-2513454
AT1G08065 0.5kb downstream 0.5kb downstream 500   false Chr1: 2511147-2511646
AT1G08065 1.0kb upstream 1.0kb upstream 2808   true Chr1: 2511647-2514454
AT1G08065 1.0kb upstream 1.0kb upstream 1000   false Chr1: 2513455-2514454
AT1G08065 1.0kb downstream 1.0kb downstream 2808   true Chr1: 2510647-2513454
AT1G08065 1.0kb downstream 1.0kb downstream 1000   false Chr1: 2510647-2511646
AT1G08065 3.0kb upstream 3.0kb upstream 4808   true Chr1: 2511647-2516454
AT1G08065 3.0kb upstream 3.0kb upstream 3000   false Chr1: 2513455-2516454
AT1G08065 3.0kb downstream 3.0kb downstream 4808   true Chr1: 2508647-2513454
AT1G08065 3.0kb downstream 3.0kb downstream 3000   false Chr1: 2508647-2511646

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1 Pathways

Data Source: KEGG

Identifier Name
00910 Nitrogen metabolism

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0