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Gene : VPS41 A. thaliana

Gene ID  ? AT1G08190
Brief Description  vacuolar protein sorting 41  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? vacuolar protein sorting 41 (VPS41); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding; INVOLVED IN: gravitropism, protein targeting to vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), Vacuolar protein sorting-associated protein 41 (InterPro:IPR016902), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Might be involved in protein sorting to the vacuole.  Source: TAIR, Jun 30, 2015.
Name  ? vacuolar protein sorting 41
  • synonyms:
  • VAM2,
  • ZIP2,
  • ATVAM2,
  • VACUOLAR PROTEIN SORTING 41,
  • ATVPS41,
  • ZIGZAG SUPPRESSOR 2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtVPS41 is involved in protein trafficking to the vacuole. 19884248

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G08190 0.5kb upstream 0.5kb upstream 6529   true Chr1: 2566920-2573448
AT1G08190 0.5kb upstream 0.5kb upstream 500   false Chr1: 2566920-2567419
AT1G08190 0.5kb downstream 0.5kb downstream 6529   true Chr1: 2567420-2573948
AT1G08190 0.5kb downstream 0.5kb downstream 500   false Chr1: 2573449-2573948
AT1G08190 1.0kb upstream 1.0kb upstream 7029   true Chr1: 2566420-2573448
AT1G08190 1.0kb upstream 1.0kb upstream 1000   false Chr1: 2566420-2567419
AT1G08190 1.0kb downstream 1.0kb downstream 7029   true Chr1: 2567420-2574448
AT1G08190 1.0kb downstream 1.0kb downstream 1000   false Chr1: 2573449-2574448
AT1G08190 3.0kb upstream 3.0kb upstream 9029   true Chr1: 2564420-2573448
AT1G08190 3.0kb upstream 3.0kb upstream 3000   false Chr1: 2564420-2567419
AT1G08190 3.0kb downstream 3.0kb downstream 9029   true Chr1: 2567420-2576448
AT1G08190 3.0kb downstream 3.0kb downstream 3000   false Chr1: 2573449-2576448

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016