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Gene : AT1G10490 A. thaliana

Gene ID  ? AT1G10490
Brief Description  GNAT acetyltransferase (DUF699)  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (TAIR:AT3G57940.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G10490 0.5kb upstream 0.5kb upstream 7930   true Chr1: 3452691-3460620
AT1G10490 0.5kb upstream 0.5kb upstream 500   false Chr1: 3452691-3453190
AT1G10490 0.5kb downstream 0.5kb downstream 7930   true Chr1: 3453191-3461120
AT1G10490 0.5kb downstream 0.5kb downstream 500   false Chr1: 3460621-3461120
AT1G10490 1.0kb upstream 1.0kb upstream 8430   true Chr1: 3452191-3460620
AT1G10490 1.0kb upstream 1.0kb upstream 1000   false Chr1: 3452191-3453190
AT1G10490 1.0kb downstream 1.0kb downstream 8430   true Chr1: 3453191-3461620
AT1G10490 1.0kb downstream 1.0kb downstream 1000   false Chr1: 3460621-3461620
AT1G10490 3.0kb upstream 3.0kb upstream 10430   true Chr1: 3450191-3460620
AT1G10490 3.0kb upstream 3.0kb upstream 3000   false Chr1: 3450191-3453190
AT1G10490 3.0kb downstream 3.0kb downstream 10430   true Chr1: 3453191-3463620
AT1G10490 3.0kb downstream 3.0kb downstream 3000   false Chr1: 3460621-3463620

Proteins

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1 Pathways

Data Source: KEGG

Identifier Name
03008 Ribosome biogenesis in eukaryotes

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139