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Gene : AT1G12244 A. thaliana

Gene ID  ? AT1G12244
Brief Description  Polynucleotidyl transferase, ribonuclease H-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nucleic acid binding; INVOLVED IN: DNA repair, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination, response to DNA damage stimulus; LOCATED IN: endomembrane system, cytoplasm; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G12244 0.5kb upstream 0.5kb upstream 1893   true Chr1: 4157154-4159046
AT1G12244 0.5kb upstream 0.5kb upstream 500   false Chr1: 4157154-4157653
AT1G12244 0.5kb downstream 0.5kb downstream 1893   true Chr1: 4157654-4159546
AT1G12244 0.5kb downstream 0.5kb downstream 500   false Chr1: 4159047-4159546
AT1G12244 1.0kb upstream 1.0kb upstream 2393   true Chr1: 4156654-4159046
AT1G12244 1.0kb upstream 1.0kb upstream 1000   false Chr1: 4156654-4157653
AT1G12244 1.0kb downstream 1.0kb downstream 2393   true Chr1: 4157654-4160046
AT1G12244 1.0kb downstream 1.0kb downstream 1000   false Chr1: 4159047-4160046
AT1G12244 3.0kb upstream 3.0kb upstream 4393   true Chr1: 4154654-4159046
AT1G12244 3.0kb upstream 3.0kb upstream 3000   false Chr1: 4154654-4157653
AT1G12244 3.0kb downstream 3.0kb downstream 4393   true Chr1: 4157654-4162046
AT1G12244 3.0kb downstream 3.0kb downstream 3000   false Chr1: 4159047-4162046

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0