help  | faq  | software  | ARAPORT

Gene : LPLAT1 A. thaliana

Gene ID  ? AT1G12640
Brief Description  MBOAT (membrane bound O-acyl transferase) family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? MBOAT (membrane bound O-acyl transferase) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT1G63050.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a lysophosphatidylcholine acyltransferase (LPCAT). Participates in the Lands cycle in developing seeds.  Source: TAIR, Jun 30, 2015.
Name  ? lysophospholipid acyltransferase 1
  • synonyms:
  • AtLPLAT1,
  • lysophosphatidylcholine acyltransferase 1,
  • LPCAT1

Locus History Displayer

Publication Counts Displayer

2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Arabidopsis thaliana LPCATs, LPCAT1 and LPCAT2, participate in the Lands cycle in developing seeds. 23150634
LPCAT1 and LPCAT2 enzymes catalyzed the acylation and de-acylation of both sn positions of PC, with a preference for the sn-2 position. 24189065

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G12640 0.5kb upstream 0.5kb upstream 3128   true Chr1: 4303280-4306407
AT1G12640 0.5kb upstream 0.5kb upstream 500   false Chr1: 4305908-4306407
AT1G12640 0.5kb downstream 0.5kb downstream 3128   true Chr1: 4302780-4305907
AT1G12640 0.5kb downstream 0.5kb downstream 500   false Chr1: 4302780-4303279
AT1G12640 1.0kb upstream 1.0kb upstream 3628   true Chr1: 4303280-4306907
AT1G12640 1.0kb upstream 1.0kb upstream 1000   false Chr1: 4305908-4306907
AT1G12640 1.0kb downstream 1.0kb downstream 3628   true Chr1: 4302280-4305907
AT1G12640 1.0kb downstream 1.0kb downstream 1000   false Chr1: 4302280-4303279
AT1G12640 3.0kb upstream 3.0kb upstream 5628   true Chr1: 4303280-4308907
AT1G12640 3.0kb upstream 3.0kb upstream 3000   false Chr1: 4305908-4308907
AT1G12640 3.0kb downstream 3.0kb downstream 5628   true Chr1: 4300280-4305907
AT1G12640 3.0kb downstream 3.0kb downstream 3000   false Chr1: 4300280-4303279

Proteins

Protein Displayer


Function

Gene Ontology Displayer

5 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
01110 Biosynthesis of secondary metabolites
00561 Glycerolipid metabolism
00564 Glycerophospholipid metabolism
00565 Ether lipid metabolism

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016