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Gene : PBE1 A. thaliana

Gene ID  ? AT1G13060
Brief Description  20S proteasome beta subunit E1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? 20S proteasome beta subunit E1 (PBE1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: guard cell, cultured cell, pollen tube, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G26340.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes 20S proteasome beta subunit PBE1 (PBE1).  Source: TAIR, Jun 30, 2015.
Name  ? 20S proteasome beta subunit E1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G13060 0.5kb upstream 0.5kb upstream 3211   true Chr1: 4451690-4454900
AT1G13060 0.5kb upstream 0.5kb upstream 500   false Chr1: 4451690-4452189
AT1G13060 0.5kb downstream 0.5kb downstream 3211   true Chr1: 4452190-4455400
AT1G13060 0.5kb downstream 0.5kb downstream 500   false Chr1: 4454901-4455400
AT1G13060 1.0kb upstream 1.0kb upstream 3711   true Chr1: 4451190-4454900
AT1G13060 1.0kb upstream 1.0kb upstream 1000   false Chr1: 4451190-4452189
AT1G13060 1.0kb downstream 1.0kb downstream 3711   true Chr1: 4452190-4455900
AT1G13060 1.0kb downstream 1.0kb downstream 1000   false Chr1: 4454901-4455900
AT1G13060 3.0kb upstream 3.0kb upstream 5711   true Chr1: 4449190-4454900
AT1G13060 3.0kb upstream 3.0kb upstream 3000   false Chr1: 4449190-4452189
AT1G13060 3.0kb downstream 3.0kb downstream 5711   true Chr1: 4452190-4457900
AT1G13060 3.0kb downstream 3.0kb downstream 3000   false Chr1: 4454901-4457900

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1 Pathways

Data Source: KEGG

Identifier Name
03050 Proteasome

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139