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Gene : RH36 A. thaliana

Gene ID  ? AT1G16280
Brief Description  RNA helicase 36  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? RNA helicase 36 (RH36); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: post-embryonic development, embryo sac development, rRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a putative DEAD-box RNA helicase. Essential for female gametogenesis.  Source: TAIR, Jun 30, 2015.
Name  ? RNA helicase 36
  • synonyms:
  • AtRH36,
  • Arabidopsis thaliana RNA helicase 36,
  • SWA3,
  • SLOW WALKER 3

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
AtRH36 is a DEAD-box RNA helicase essential for the development of female gametophytes and is required for the normal progression of mitotic division cycles during gametogenesis, and plays a role in rRNA biogenesis. [AtRH36] 20378763

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G16280 0.5kb upstream 0.5kb upstream 3438   true Chr1: 5567742-5571179
AT1G16280 0.5kb upstream 0.5kb upstream 500   false Chr1: 5570680-5571179
AT1G16280 0.5kb downstream 0.5kb downstream 3438   true Chr1: 5567242-5570679
AT1G16280 0.5kb downstream 0.5kb downstream 500   false Chr1: 5567242-5567741
AT1G16280 1.0kb upstream 1.0kb upstream 3938   true Chr1: 5567742-5571679
AT1G16280 1.0kb upstream 1.0kb upstream 1000   false Chr1: 5570680-5571679
AT1G16280 1.0kb downstream 1.0kb downstream 3938   true Chr1: 5566742-5570679
AT1G16280 1.0kb downstream 1.0kb downstream 1000   false Chr1: 5566742-5567741
AT1G16280 3.0kb upstream 3.0kb upstream 5938   true Chr1: 5567742-5573679
AT1G16280 3.0kb upstream 3.0kb upstream 3000   false Chr1: 5570680-5573679
AT1G16280 3.0kb downstream 3.0kb downstream 5938   true Chr1: 5564742-5570679
AT1G16280 3.0kb downstream 3.0kb downstream 3000   false Chr1: 5564742-5567741

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016