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Gene : FUG1 A. thaliana

Gene ID  ? AT1G17220
Brief Description  Translation initiation factor 2, small GTP-binding protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? fu-gaeri1 (FUG1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF-2, N-terminal (InterPro:IPR006847), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation initiation factor 2, small GTP-binding protein (TAIR:AT4G11160.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.  Source: TAIR, Jun 30, 2015.
Name  ? fu-gaeri1

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G17220 0.5kb upstream 0.5kb upstream 5994   true Chr1: 5884507-5890500
AT1G17220 0.5kb upstream 0.5kb upstream 500   false Chr1: 5884507-5885006
AT1G17220 0.5kb downstream 0.5kb downstream 5994   true Chr1: 5885007-5891000
AT1G17220 0.5kb downstream 0.5kb downstream 500   false Chr1: 5890501-5891000
AT1G17220 1.0kb upstream 1.0kb upstream 6494   true Chr1: 5884007-5890500
AT1G17220 1.0kb upstream 1.0kb upstream 1000   false Chr1: 5884007-5885006
AT1G17220 1.0kb downstream 1.0kb downstream 6494   true Chr1: 5885007-5891500
AT1G17220 1.0kb downstream 1.0kb downstream 1000   false Chr1: 5890501-5891500
AT1G17220 3.0kb upstream 3.0kb upstream 8494   true Chr1: 5882007-5890500
AT1G17220 3.0kb upstream 3.0kb upstream 3000   false Chr1: 5882007-5885006
AT1G17220 3.0kb downstream 3.0kb downstream 8494   true Chr1: 5885007-5893500
AT1G17220 3.0kb downstream 3.0kb downstream 3000   false Chr1: 5890501-5893500

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0