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Gene : ATB BETA A. thaliana

Gene ID  ? AT1G17720
Brief Description  Protein phosphatase 2A, regulatory subunit PR55  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ATB BETA; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (TAIR:AT1G51690.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? type 2A protein serine/threonine phosphatase 55 kDa B  Source: TAIR, Jun 30, 2015.

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Mutants homozygous for mutation in Bbeta and heterozygous for mutation in Balpha revealed a slower activation rate for nitrate reductase (NR) than wild-type plants, pointing to these subunits as part of a PP2A complex responsible for NR dephosphorylation. 21436382

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G17720 0.5kb upstream 0.5kb upstream 5759   true Chr1: 6093185-6098943
AT1G17720 0.5kb upstream 0.5kb upstream 500   false Chr1: 6098444-6098943
AT1G17720 0.5kb downstream 0.5kb downstream 5759   true Chr1: 6092685-6098443
AT1G17720 0.5kb downstream 0.5kb downstream 500   false Chr1: 6092685-6093184
AT1G17720 1.0kb upstream 1.0kb upstream 6259   true Chr1: 6093185-6099443
AT1G17720 1.0kb upstream 1.0kb upstream 1000   false Chr1: 6098444-6099443
AT1G17720 1.0kb downstream 1.0kb downstream 6259   true Chr1: 6092185-6098443
AT1G17720 1.0kb downstream 1.0kb downstream 1000   false Chr1: 6092185-6093184
AT1G17720 3.0kb upstream 3.0kb upstream 8259   true Chr1: 6093185-6101443
AT1G17720 3.0kb upstream 3.0kb upstream 3000   false Chr1: 6098444-6101443
AT1G17720 3.0kb downstream 3.0kb downstream 8259   true Chr1: 6090185-6098443
AT1G17720 3.0kb downstream 3.0kb downstream 3000   false Chr1: 6090185-6093184

Proteins

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Function

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1 Pathways

Data Source: KEGG

Identifier Name
03015 mRNA surveillance pathway

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Expression

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12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139