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Gene : MYB52 A. thaliana

Gene ID  ? AT1G17950
Brief Description  myb domain protein 52  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? myb domain protein 52 (MYB52); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 54 (TAIR:AT1G73410.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? putative transcription factor: R2R3-MYB transcription family  Source: TAIR, Jun 30, 2015.
Name  ? myb domain protein 52
  • synonyms:
  • ATMYB52,
  • MYB DOMAIN PROTEIN 52,
  • BW52

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G17950 0.5kb upstream 0.5kb upstream 2309   true Chr1: 6176981-6179289
AT1G17950 0.5kb upstream 0.5kb upstream 500   false Chr1: 6176981-6177480
AT1G17950 0.5kb downstream 0.5kb downstream 2309   true Chr1: 6177481-6179789
AT1G17950 0.5kb downstream 0.5kb downstream 500   false Chr1: 6179290-6179789
AT1G17950 1.0kb upstream 1.0kb upstream 2809   true Chr1: 6176481-6179289
AT1G17950 1.0kb upstream 1.0kb upstream 1000   false Chr1: 6176481-6177480
AT1G17950 1.0kb downstream 1.0kb downstream 2809   true Chr1: 6177481-6180289
AT1G17950 1.0kb downstream 1.0kb downstream 1000   false Chr1: 6179290-6180289
AT1G17950 3.0kb upstream 3.0kb upstream 4809   true Chr1: 6174481-6179289
AT1G17950 3.0kb upstream 3.0kb upstream 3000   false Chr1: 6174481-6177480
AT1G17950 3.0kb downstream 3.0kb downstream 4809   true Chr1: 6177481-6182289
AT1G17950 3.0kb downstream 3.0kb downstream 3000   false Chr1: 6179290-6182289

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Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0