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Gene : CDKD1;3 A. thaliana

Gene ID  ? AT1G18040
Brief Description  cyclin-dependent kinase D1;3  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? cyclin-dependent kinase D1;3 (CDKD1;3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;1 (TAIR:AT1G73690.1).  Source: TAIR, Jun 30, 2015.
Name  ? cyclin-dependent kinase D1;3
  • synonyms:
  • CYCLIN-DEPENDENT KINASE D1;3,
  • AT;CDCKD;3,
  • CAK2AT

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G18040 0.5kb upstream 0.5kb upstream 3158   true Chr1: 6206871-6210028
AT1G18040 0.5kb upstream 0.5kb upstream 500   false Chr1: 6209529-6210028
AT1G18040 0.5kb downstream 0.5kb downstream 3158   true Chr1: 6206371-6209528
AT1G18040 0.5kb downstream 0.5kb downstream 500   false Chr1: 6206371-6206870
AT1G18040 1.0kb upstream 1.0kb upstream 3658   true Chr1: 6206871-6210528
AT1G18040 1.0kb upstream 1.0kb upstream 1000   false Chr1: 6209529-6210528
AT1G18040 1.0kb downstream 1.0kb downstream 3658   true Chr1: 6205871-6209528
AT1G18040 1.0kb downstream 1.0kb downstream 1000   false Chr1: 6205871-6206870
AT1G18040 3.0kb upstream 3.0kb upstream 5658   true Chr1: 6206871-6212528
AT1G18040 3.0kb upstream 3.0kb upstream 3000   false Chr1: 6209529-6212528
AT1G18040 3.0kb downstream 3.0kb downstream 5658   true Chr1: 6203871-6209528
AT1G18040 3.0kb downstream 3.0kb downstream 3000   false Chr1: 6203871-6206870

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2 Pathways

Data Source: KEGG

Identifier Name
03022 Basal transcription factors
03420 Nucleotide excision repair

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Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139