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Gene : SRS7 A. thaliana

Gene ID  ? AT1G19790
Brief Description  SHI-related sequence 7  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.  Source: TAIR, Jun 30, 2015.
Name  ? SHI-related sequence 7

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Mutations within SRS7 cause disrupted anther dehiscence and abnormal floral organ development in addition to dwarfed growth with small, curled leaves. 20706774

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G19790 0.5kb upstream 0.5kb upstream 2694   true Chr1: 6838120-6840813
AT1G19790 0.5kb upstream 0.5kb upstream 500   false Chr1: 6840314-6840813
AT1G19790 0.5kb downstream 0.5kb downstream 2694   true Chr1: 6837620-6840313
AT1G19790 0.5kb downstream 0.5kb downstream 500   false Chr1: 6837620-6838119
AT1G19790 1.0kb upstream 1.0kb upstream 3194   true Chr1: 6838120-6841313
AT1G19790 1.0kb upstream 1.0kb upstream 1000   false Chr1: 6840314-6841313
AT1G19790 1.0kb downstream 1.0kb downstream 3194   true Chr1: 6837120-6840313
AT1G19790 1.0kb downstream 1.0kb downstream 1000   false Chr1: 6837120-6838119
AT1G19790 3.0kb upstream 3.0kb upstream 5194   true Chr1: 6838120-6843313
AT1G19790 3.0kb upstream 3.0kb upstream 3000   false Chr1: 6840314-6843313
AT1G19790 3.0kb downstream 3.0kb downstream 5194   true Chr1: 6835120-6840313
AT1G19790 3.0kb downstream 3.0kb downstream 3000   false Chr1: 6835120-6838119

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016