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Gene : CAL A. thaliana

Gene ID  ? AT1G26310
Brief Description  K-box region and MADS-box transcription factor family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? CAULIFLOWER (CAL); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, floral meristem determinacy; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants.  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • AGL10,
  • AGAMOUS-like 10,
  • CAL1

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Expression of the transcription factor CAL is activated by LFY and the meristem identity regulator LMI1. 16554366
The unique and redundant functions of the APETALA1 and CAULIFLOWER genes have been mapped to the four protein domains that characterize type-II MADS-domain proteins. 16893974


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G26310 0.5kb upstream 0.5kb upstream 4151   true Chr1: 9099994-9104144
AT1G26310 0.5kb upstream 0.5kb upstream 500   false Chr1: 9103645-9104144
AT1G26310 0.5kb downstream 0.5kb downstream 4151   true Chr1: 9099494-9103644
AT1G26310 0.5kb downstream 0.5kb downstream 500   false Chr1: 9099494-9099993
AT1G26310 1.0kb upstream 1.0kb upstream 4651   true Chr1: 9099994-9104644
AT1G26310 1.0kb upstream 1.0kb upstream 1000   false Chr1: 9103645-9104644
AT1G26310 1.0kb downstream 1.0kb downstream 4651   true Chr1: 9098994-9103644
AT1G26310 1.0kb downstream 1.0kb downstream 1000   false Chr1: 9098994-9099993
AT1G26310 3.0kb upstream 3.0kb upstream 6651   true Chr1: 9099994-9106644
AT1G26310 3.0kb upstream 3.0kb upstream 3000   false Chr1: 9103645-9106644
AT1G26310 3.0kb downstream 3.0kb downstream 6651   true Chr1: 9096994-9103644
AT1G26310 3.0kb downstream 3.0kb downstream 3000   false Chr1: 9096994-9099993


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0 Pathways

Data Source: KEGG

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139