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Gene : AT1G26450 A. thaliana

Gene ID  ? AT1G26450
Brief Description  Carbohydrate-binding X8 domain superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Carbohydrate-binding X8 domain superfamily protein; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: plasmodesmata callose-binding protein 3 (TAIR:AT1G18650.1).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G26450 0.5kb upstream 0.5kb upstream 2115   true Chr1: 9148636-9150750
AT1G26450 0.5kb upstream 0.5kb upstream 500   false Chr1: 9150251-9150750
AT1G26450 0.5kb downstream 0.5kb downstream 2115   true Chr1: 9148136-9150250
AT1G26450 0.5kb downstream 0.5kb downstream 500   false Chr1: 9148136-9148635
AT1G26450 1.0kb upstream 1.0kb upstream 2615   true Chr1: 9148636-9151250
AT1G26450 1.0kb upstream 1.0kb upstream 1000   false Chr1: 9150251-9151250
AT1G26450 1.0kb downstream 1.0kb downstream 2615   true Chr1: 9147636-9150250
AT1G26450 1.0kb downstream 1.0kb downstream 1000   false Chr1: 9147636-9148635
AT1G26450 3.0kb upstream 3.0kb upstream 4615   true Chr1: 9148636-9153250
AT1G26450 3.0kb upstream 3.0kb upstream 3000   false Chr1: 9150251-9153250
AT1G26450 3.0kb downstream 3.0kb downstream 4615   true Chr1: 9145636-9150250
AT1G26450 3.0kb downstream 3.0kb downstream 3000   false Chr1: 9145636-9148635

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0