help  | faq  | software  | ARAPORT

Gene : PEX7 A. thaliana

Gene ID  ? AT1G29260
Brief Description  peroxin 7  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? peroxin 7 (PEX7); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G35050.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function.  Source: TAIR, Jun 30, 2015.
Name  ? peroxin 7
  • synonyms:
  • ARABIDOPSIS PEROXIN 7,
  • ATPEX7

Locus History Displayer

Publication Counts Displayer

5 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Pex5p and Pex7p play different roles in the maintenance of glyoxysomal and leaf peroxisomal functions in plants 15637057
results suggest that the targeting of PEX7 to peroxisomes requires four proteins: a PTS2-containing protein, PEX14, PEX13 and PEX12. 19594707
PEX7 facilitates PEX5 accumulation and import of PTS1 cargo into peroxisomes 20130089
RabE1c binds PEX7 and facilitates PEX7 degradation in the presence of immobile GFP-PEX7 accumulated at the membrane 23297417
Peroxisomal plant nitric oxide synthase (NOS) protein is imported by peroxisomal targeting signal type 2 (PTS2) in a process that depends on the cytosolic receptor PEX7 and calmodulin 24801177

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G29260 0.5kb upstream 0.5kb upstream 2008   true Chr1: 10224315-10226322
AT1G29260 0.5kb upstream 0.5kb upstream 500   false Chr1: 10224315-10224814
AT1G29260 0.5kb downstream 0.5kb downstream 2008   true Chr1: 10224815-10226822
AT1G29260 0.5kb downstream 0.5kb downstream 500   false Chr1: 10226323-10226822
AT1G29260 1.0kb upstream 1.0kb upstream 2508   true Chr1: 10223815-10226322
AT1G29260 1.0kb upstream 1.0kb upstream 1000   false Chr1: 10223815-10224814
AT1G29260 1.0kb downstream 1.0kb downstream 2508   true Chr1: 10224815-10227322
AT1G29260 1.0kb downstream 1.0kb downstream 1000   false Chr1: 10226323-10227322
AT1G29260 3.0kb upstream 3.0kb upstream 4508   true Chr1: 10221815-10226322
AT1G29260 3.0kb upstream 3.0kb upstream 3000   false Chr1: 10221815-10224814
AT1G29260 3.0kb downstream 3.0kb downstream 4508   true Chr1: 10224815-10229322
AT1G29260 3.0kb downstream 3.0kb downstream 3000   false Chr1: 10226323-10229322

Proteins

Protein Displayer


Function

Gene Ontology Displayer

1 Pathways

Data Source: KEGG

Identifier Name
04146 Peroxisome

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

12 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139