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Gene : INT2 A. thaliana

Gene ID  ? AT1G30220
Brief Description  inositol transporter 2  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? inositol transporter 2 (INT2); CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: inositol transporter 4 (TAIR:AT4G16480.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Inositol transporter presenting conserved extracellular loop domains homologs of plexins/semaphorin/integrin (PSI) domains from animal type I receptors.  Source: TAIR, Jun 30, 2015.
Name  ? inositol transporter 2
  • synonyms:
  • ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2,
  • ATINT2

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
In oocytes, AtINT2 mediated the symport of H(+) and several inositol epimers, such as myoinositol, scylloinositol, d-chiroinositol, and mucoinositol. 17951450

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G30220 0.5kb upstream 0.5kb upstream 3362   true Chr1: 10632720-10636081
AT1G30220 0.5kb upstream 0.5kb upstream 500   false Chr1: 10635582-10636081
AT1G30220 0.5kb downstream 0.5kb downstream 3362   true Chr1: 10632220-10635581
AT1G30220 0.5kb downstream 0.5kb downstream 500   false Chr1: 10632220-10632719
AT1G30220 1.0kb upstream 1.0kb upstream 3862   true Chr1: 10632720-10636581
AT1G30220 1.0kb upstream 1.0kb upstream 1000   false Chr1: 10635582-10636581
AT1G30220 1.0kb downstream 1.0kb downstream 3862   true Chr1: 10631720-10635581
AT1G30220 1.0kb downstream 1.0kb downstream 1000   false Chr1: 10631720-10632719
AT1G30220 3.0kb upstream 3.0kb upstream 5862   true Chr1: 10632720-10638581
AT1G30220 3.0kb upstream 3.0kb upstream 3000   false Chr1: 10635582-10638581
AT1G30220 3.0kb downstream 3.0kb downstream 5862   true Chr1: 10629720-10635581
AT1G30220 3.0kb downstream 3.0kb downstream 3000   false Chr1: 10629720-10632719

Proteins

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Function

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0 Pathways

Data Source: KEGG

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Expression

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Homology

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016