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Gene : AT1G30240 A. thaliana

Gene ID  ? AT1G30240
Brief Description  proline-, glutamic acid/leucine-rich protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024).  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G30240 0.5kb upstream 0.5kb upstream 5665   true Chr1: 10641031-10646695
AT1G30240 0.5kb upstream 0.5kb upstream 500   false Chr1: 10646196-10646695
AT1G30240 0.5kb downstream 0.5kb downstream 5665   true Chr1: 10640531-10646195
AT1G30240 0.5kb downstream 0.5kb downstream 500   false Chr1: 10640531-10641030
AT1G30240 1.0kb upstream 1.0kb upstream 6165   true Chr1: 10641031-10647195
AT1G30240 1.0kb upstream 1.0kb upstream 1000   false Chr1: 10646196-10647195
AT1G30240 1.0kb downstream 1.0kb downstream 6165   true Chr1: 10640031-10646195
AT1G30240 1.0kb downstream 1.0kb downstream 1000   false Chr1: 10640031-10641030
AT1G30240 3.0kb upstream 3.0kb upstream 8165   true Chr1: 10641031-10649195
AT1G30240 3.0kb upstream 3.0kb upstream 3000   false Chr1: 10646196-10649195
AT1G30240 3.0kb downstream 3.0kb downstream 8165   true Chr1: 10638031-10646195
AT1G30240 3.0kb downstream 3.0kb downstream 3000   false Chr1: 10638031-10641030

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0 Pathways

Data Source: KEGG

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7 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07