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Gene : GOA A. thaliana

Gene ID  ? AT1G31140
Brief Description  GORDITA  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? GORDITA (GOA); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: integument development, fruit development, fruit morphogenesis, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: nucleus; EXPRESSED IN: rosette leaf, embryo, cauline leaf, fruit, flower; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G23260.2).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a B-sister MADS-box protein, GORDITA which is specific to the Brassicaceae. GOA is the most closely related paralog of ABS. GOA represses fruit growth and contributes to integument development. Over-expression of GOA results in disorganized floral structure and addition of carpel-like features to sepals.  Source: TAIR, Jun 30, 2015.
Name  ? GORDITA
  • synonyms:
  • AGAMOUS-like 63,
  • AGL63

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
GOA has a role in integument development and regulating fruit growth. 20088901
The knockdown phenotype of GOA suggests a role for this gene in fruit longitudinal growth, while over-expression of GOA results in disorganized floral structure and addition of carpel-like features to sepals 20598091

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G31140 0.5kb upstream 0.5kb upstream 2345   true Chr1: 11117441-11119785
AT1G31140 0.5kb upstream 0.5kb upstream 500   false Chr1: 11117441-11117940
AT1G31140 0.5kb downstream 0.5kb downstream 2345   true Chr1: 11117941-11120285
AT1G31140 0.5kb downstream 0.5kb downstream 500   false Chr1: 11119786-11120285
AT1G31140 1.0kb upstream 1.0kb upstream 2845   true Chr1: 11116941-11119785
AT1G31140 1.0kb upstream 1.0kb upstream 1000   false Chr1: 11116941-11117940
AT1G31140 1.0kb downstream 1.0kb downstream 2845   true Chr1: 11117941-11120785
AT1G31140 1.0kb downstream 1.0kb downstream 1000   false Chr1: 11119786-11120785
AT1G31140 3.0kb upstream 3.0kb upstream 4845   true Chr1: 11114941-11119785
AT1G31140 3.0kb upstream 3.0kb upstream 3000   false Chr1: 11114941-11117940
AT1G31140 3.0kb downstream 3.0kb downstream 4845   true Chr1: 11117941-11122785
AT1G31140 3.0kb downstream 3.0kb downstream 3000   false Chr1: 11119786-11122785

Proteins

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0 Pathways

Data Source: KEGG

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Interactions

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139