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Gene : ATSYP24 A. thaliana

Gene ID  ? AT1G32270
Brief Description  syntaxin  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ATSYP24; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? member of SYP2 Gene Family  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G32270 0.5kb upstream 0.5kb upstream 3145   true Chr1: 11642093-11645237
AT1G32270 0.5kb upstream 0.5kb upstream 500   false Chr1: 11642093-11642592
AT1G32270 0.5kb downstream 0.5kb downstream 3145   true Chr1: 11642593-11645737
AT1G32270 0.5kb downstream 0.5kb downstream 500   false Chr1: 11645238-11645737
AT1G32270 1.0kb upstream 1.0kb upstream 3645   true Chr1: 11641593-11645237
AT1G32270 1.0kb upstream 1.0kb upstream 1000   false Chr1: 11641593-11642592
AT1G32270 1.0kb downstream 1.0kb downstream 3645   true Chr1: 11642593-11646237
AT1G32270 1.0kb downstream 1.0kb downstream 1000   false Chr1: 11645238-11646237
AT1G32270 3.0kb upstream 3.0kb upstream 5645   true Chr1: 11639593-11645237
AT1G32270 3.0kb upstream 3.0kb upstream 3000   false Chr1: 11639593-11642592
AT1G32270 3.0kb downstream 3.0kb downstream 5645   true Chr1: 11642593-11648237
AT1G32270 3.0kb downstream 3.0kb downstream 3000   false Chr1: 11645238-11648237

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Function

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2 Pathways

Data Source: KEGG

Identifier Name
04145 Phagosome
04130 SNARE interactions in vesicular transport

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Expression

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Array Expression

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from GOC GO annotations assigned by the GO Consortium 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0