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Gene : ABCI7 A. thaliana

Gene ID  ? AT1G32500
Brief Description  non-intrinsic ABC protein 6  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? non-intrinsic ABC protein 6 (NAP6); CONTAINS InterPro DOMAIN/s: SUF system FeS cluster assembly, SufBD (InterPro:IPR000825); BEST Arabidopsis thaliana protein match is: ATP binding cassette protein 1 (TAIR:AT4G04770.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.  Source: TAIR, Jun 30, 2015.
Name  ? ATP-binding cassette I7
  • synonyms:
  • NAP6,
  • ATNAP6,
  • non-intrinsic ABC protein 6,
  • non-intrinsic ABC protein 6

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G32500 0.5kb upstream 0.5kb upstream 2893   true Chr1: 11749798-11752690
AT1G32500 0.5kb upstream 0.5kb upstream 500   false Chr1: 11752191-11752690
AT1G32500 0.5kb downstream 0.5kb downstream 2893   true Chr1: 11749298-11752190
AT1G32500 0.5kb downstream 0.5kb downstream 500   false Chr1: 11749298-11749797
AT1G32500 1.0kb upstream 1.0kb upstream 3393   true Chr1: 11749798-11753190
AT1G32500 1.0kb upstream 1.0kb upstream 1000   false Chr1: 11752191-11753190
AT1G32500 1.0kb downstream 1.0kb downstream 3393   true Chr1: 11748798-11752190
AT1G32500 1.0kb downstream 1.0kb downstream 1000   false Chr1: 11748798-11749797
AT1G32500 3.0kb upstream 3.0kb upstream 5393   true Chr1: 11749798-11755190
AT1G32500 3.0kb upstream 3.0kb upstream 3000   false Chr1: 11752191-11755190
AT1G32500 3.0kb downstream 3.0kb downstream 5393   true Chr1: 11746798-11752190
AT1G32500 3.0kb downstream 3.0kb downstream 3000   false Chr1: 11746798-11749797

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016