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Gene : AT1G35560 A. thaliana

Gene ID  ? AT1G35560
Brief Description  TCP family transcription factor  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G72010.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a member of the TCP-P subfamily that is involved in flowering time control and plant development. Mutants present an early flowering phenotype.  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • TCP23,
  • AtTCP23,
  • TCP domain protein 23

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G35560 0.5kb upstream 0.5kb upstream 1912   true Chr1: 13115824-13117735
AT1G35560 0.5kb upstream 0.5kb upstream 500   false Chr1: 13117236-13117735
AT1G35560 0.5kb downstream 0.5kb downstream 1912   true Chr1: 13115324-13117235
AT1G35560 0.5kb downstream 0.5kb downstream 500   false Chr1: 13115324-13115823
AT1G35560 1.0kb upstream 1.0kb upstream 2412   true Chr1: 13115824-13118235
AT1G35560 1.0kb upstream 1.0kb upstream 1000   false Chr1: 13117236-13118235
AT1G35560 1.0kb downstream 1.0kb downstream 2412   true Chr1: 13114824-13117235
AT1G35560 1.0kb downstream 1.0kb downstream 1000   false Chr1: 13114824-13115823
AT1G35560 3.0kb upstream 3.0kb upstream 4412   true Chr1: 13115824-13120235
AT1G35560 3.0kb upstream 3.0kb upstream 3000   false Chr1: 13117236-13120235
AT1G35560 3.0kb downstream 3.0kb downstream 4412   true Chr1: 13112824-13117235
AT1G35560 3.0kb downstream 3.0kb downstream 3000   false Chr1: 13112824-13115823

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139