help  | faq  | software  | ARAPORT

Gene : SEU A. thaliana

Gene ID  ? AT1G43850
Brief Description  SEUSS transcriptional co-regulator  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? seuss (SEU); BEST Arabidopsis thaliana protein match is: SEUSS-like 3 (TAIR:AT4G25515.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls.  Source: TAIR, Jun 30, 2015.
Name  ? seuss

Locus History Displayer

Publication Counts Displayer

8 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
model is proposed in which SEU functions jointly with ETT in auxin response to promote floral organ patterning and growth 15358669
SEUSS and LEUNIG control blade cell number and vasculature development within the petal and regulate petal polarity along the adaxial/abaxial axis. 16625397
SEU and ANT are part of a complex and robust molecular system that coordinates patterning cues and cellular proliferation along the three positional axes of the developing gynoecium. 18184731
SEU and SLK1 are required for optimal auxin signaling during root and gynoecial development. 20007451
The seu cyp85A2 double mutants displayed enhanced disruptions of gynoecial and ovule development. 20836864
LEUNIG (LUG) and SEUSS (SEU) co-repressors repress miR172 expression in the outer whorls of Arabidopsis thaliana flowers. 21610026
SEUSS (SEU) and AINTEGUMENTA (ANT) encode transcriptional regulators that are critical for the proper formation of ovules from the carpel margin meristem (CMM). 22031826
SEU and SLK2 function redundantly to promote embryonic shoot development and likely act through a non-cell autonomous pathway to promote KNOXI activity. 25060324

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G43850 0.5kb upstream 0.5kb upstream 5562   true Chr1: 16616488-16622049
AT1G43850 0.5kb upstream 0.5kb upstream 500   false Chr1: 16616488-16616987
AT1G43850 0.5kb downstream 0.5kb downstream 5562   true Chr1: 16616988-16622549
AT1G43850 0.5kb downstream 0.5kb downstream 500   false Chr1: 16622050-16622549
AT1G43850 1.0kb upstream 1.0kb upstream 6062   true Chr1: 16615988-16622049
AT1G43850 1.0kb upstream 1.0kb upstream 1000   false Chr1: 16615988-16616987
AT1G43850 1.0kb downstream 1.0kb downstream 6062   true Chr1: 16616988-16623049
AT1G43850 1.0kb downstream 1.0kb downstream 1000   false Chr1: 16622050-16623049
AT1G43850 3.0kb upstream 3.0kb upstream 8062   true Chr1: 16613988-16622049
AT1G43850 3.0kb upstream 3.0kb upstream 3000   false Chr1: 16613988-16616987
AT1G43850 3.0kb downstream 3.0kb downstream 8062   true Chr1: 16616988-16625049
AT1G43850 3.0kb downstream 3.0kb downstream 3000   false Chr1: 16622050-16625049

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139