help  | faq  | software  | ARAPORT

Gene : RKL1 A. thaliana

Gene ID  ? AT1G48480
Brief Description  receptor-like kinase 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? receptor-like kinase 1 (RKL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: receptor-like kinase 902 (TAIR:AT3G17840.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Arabidopsis thaliana receptor-like protein kinase (RKL1) gene  Source: TAIR, Jun 30, 2015.
Name  ? receptor-like kinase 1

Locus History Displayer

Publication Counts Displayer

1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
result suggests that RLK902 and RKL1 may have common biochemical functions, especially signal transduction. They are involved in various stress conditions as mechanical wounding, treatment with salicylic acid, and pathogen infection. [RKL1] 15618630

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G48480 0.5kb upstream 0.5kb upstream 3410   true Chr1: 17917707-17921116
AT1G48480 0.5kb upstream 0.5kb upstream 500   false Chr1: 17917707-17918206
AT1G48480 0.5kb downstream 0.5kb downstream 3410   true Chr1: 17918207-17921616
AT1G48480 0.5kb downstream 0.5kb downstream 500   false Chr1: 17921117-17921616
AT1G48480 1.0kb upstream 1.0kb upstream 3910   true Chr1: 17917207-17921116
AT1G48480 1.0kb upstream 1.0kb upstream 1000   false Chr1: 17917207-17918206
AT1G48480 1.0kb downstream 1.0kb downstream 3910   true Chr1: 17918207-17922116
AT1G48480 1.0kb downstream 1.0kb downstream 1000   false Chr1: 17921117-17922116
AT1G48480 3.0kb upstream 3.0kb upstream 5910   true Chr1: 17915207-17921116
AT1G48480 3.0kb upstream 3.0kb upstream 3000   false Chr1: 17915207-17918206
AT1G48480 3.0kb downstream 3.0kb downstream 5910   true Chr1: 17918207-17924116
AT1G48480 3.0kb downstream 3.0kb downstream 3000   false Chr1: 17921117-17924116

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from InterPro    
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139