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Gene : ATPI4K ALPHA A. thaliana

Gene ID  ? AT1G49340
Brief Description  Phosphatidylinositol 3- and 4-kinase family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? ATPI4K ALPHA; FUNCTIONS IN: 1-phosphatidylinositol 4-kinase activity, inositol or phosphatidylinositol kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: shoot, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphoinositide 3-kinase, accessory (PIK) domain (InterPro:IPR001263), Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Phosphatidylinositol Kinase (InterPro:IPR015433), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G51040.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a phosphatidylinositol 4-kinase that is expressed in inflorescences and shoots.  Source: TAIR, Jun 30, 2015.

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G49340 0.5kb upstream 0.5kb upstream 13123   true Chr1: 18251550-18264672
AT1G49340 0.5kb upstream 0.5kb upstream 500   false Chr1: 18251550-18252049
AT1G49340 0.5kb downstream 0.5kb downstream 13123   true Chr1: 18252050-18265172
AT1G49340 0.5kb downstream 0.5kb downstream 500   false Chr1: 18264673-18265172
AT1G49340 1.0kb upstream 1.0kb upstream 13623   true Chr1: 18251050-18264672
AT1G49340 1.0kb upstream 1.0kb upstream 1000   false Chr1: 18251050-18252049
AT1G49340 1.0kb downstream 1.0kb downstream 13623   true Chr1: 18252050-18265672
AT1G49340 1.0kb downstream 1.0kb downstream 1000   false Chr1: 18264673-18265672
AT1G49340 3.0kb upstream 3.0kb upstream 15623   true Chr1: 18249050-18264672
AT1G49340 3.0kb upstream 3.0kb upstream 3000   false Chr1: 18249050-18252049
AT1G49340 3.0kb downstream 3.0kb downstream 15623   true Chr1: 18252050-18267672
AT1G49340 3.0kb downstream 3.0kb downstream 3000   false Chr1: 18264673-18267672

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3 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
04070 Phosphatidylinositol signaling system
00562 Inositol phosphate metabolism

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0