help  | faq  | software  | ARAPORT

Gene : AT1G49700 A. thaliana

Gene ID  ? AT1G49700
Brief Description  Plant protein 1589 of unknown function  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G07675.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G49700 0.5kb upstream 0.5kb upstream 2232   true Chr1: 18388792-18391023
AT1G49700 0.5kb upstream 0.5kb upstream 500   false Chr1: 18390524-18391023
AT1G49700 0.5kb downstream 0.5kb downstream 2232   true Chr1: 18388292-18390523
AT1G49700 0.5kb downstream 0.5kb downstream 500   false Chr1: 18388292-18388791
AT1G49700 1.0kb upstream 1.0kb upstream 2732   true Chr1: 18388792-18391523
AT1G49700 1.0kb upstream 1.0kb upstream 1000   false Chr1: 18390524-18391523
AT1G49700 1.0kb downstream 1.0kb downstream 2732   true Chr1: 18387792-18390523
AT1G49700 1.0kb downstream 1.0kb downstream 1000   false Chr1: 18387792-18388791
AT1G49700 3.0kb upstream 3.0kb upstream 4732   true Chr1: 18388792-18393523
AT1G49700 3.0kb upstream 3.0kb upstream 3000   false Chr1: 18390524-18393523
AT1G49700 3.0kb downstream 3.0kb downstream 4732   true Chr1: 18385792-18390523
AT1G49700 3.0kb downstream 3.0kb downstream 3000   false Chr1: 18385792-18388791

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139