help  | faq  | software  | ARAPORT

Gene : BRL1 A. thaliana

Gene ID  ? AT1G55610
Brief Description  BRI1 like  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? BRI1 like (BRL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: BRI1-like 3 (TAIR:AT3G13380.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? mutant has Altered vascular cell differentiation; LRR Receptor Kinase  Source: TAIR, Jun 30, 2015.
Name  ? BRI1 like

Locus History Displayer

Publication Counts Displayer

1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Genetic analysis of brl1 brl3 bak1-3 triple mutants revealed that BAK1, BRL1, and BRL3 signaling modulate root growth and development by contributing to the cellular activities of provascular and quiescent center cells. 24064770

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G55610 0.5kb upstream 0.5kb upstream 5025   true Chr1: 20779493-20784517
AT1G55610 0.5kb upstream 0.5kb upstream 500   false Chr1: 20784018-20784517
AT1G55610 0.5kb downstream 0.5kb downstream 5025   true Chr1: 20778993-20784017
AT1G55610 0.5kb downstream 0.5kb downstream 500   false Chr1: 20778993-20779492
AT1G55610 1.0kb upstream 1.0kb upstream 5525   true Chr1: 20779493-20785017
AT1G55610 1.0kb upstream 1.0kb upstream 1000   false Chr1: 20784018-20785017
AT1G55610 1.0kb downstream 1.0kb downstream 5525   true Chr1: 20778493-20784017
AT1G55610 1.0kb downstream 1.0kb downstream 1000   false Chr1: 20778493-20779492
AT1G55610 3.0kb upstream 3.0kb upstream 7525   true Chr1: 20779493-20787017
AT1G55610 3.0kb upstream 3.0kb upstream 3000   false Chr1: 20784018-20787017
AT1G55610 3.0kb downstream 3.0kb downstream 7525   true Chr1: 20776493-20784017
AT1G55610 3.0kb downstream 3.0kb downstream 3000   false Chr1: 20776493-20779492

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139