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Gene : BRL1 A. thaliana

Gene ID  ? AT1G55610
Brief Description  BRI1 like  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? BRI1 like (BRL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: BRI1-like 3 (TAIR:AT3G13380.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? mutant has Altered vascular cell differentiation; LRR Receptor Kinase  Source: TAIR, Jun 30, 2015.
Name  ? BRI1 like

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Genetic analysis of brl1 brl3 bak1-3 triple mutants revealed that BAK1, BRL1, and BRL3 signaling modulate root growth and development by contributing to the cellular activities of provascular and quiescent center cells. 24064770


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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G55610 0.5kb upstream 0.5kb upstream 5025   true Chr1: 20779493-20784517
AT1G55610 0.5kb upstream 0.5kb upstream 500   false Chr1: 20784018-20784517
AT1G55610 0.5kb downstream 0.5kb downstream 5025   true Chr1: 20778993-20784017
AT1G55610 0.5kb downstream 0.5kb downstream 500   false Chr1: 20778993-20779492
AT1G55610 1.0kb upstream 1.0kb upstream 5525   true Chr1: 20779493-20785017
AT1G55610 1.0kb upstream 1.0kb upstream 1000   false Chr1: 20784018-20785017
AT1G55610 1.0kb downstream 1.0kb downstream 5525   true Chr1: 20778493-20784017
AT1G55610 1.0kb downstream 1.0kb downstream 1000   false Chr1: 20778493-20779492
AT1G55610 3.0kb upstream 3.0kb upstream 7525   true Chr1: 20779493-20787017
AT1G55610 3.0kb upstream 3.0kb upstream 3000   false Chr1: 20784018-20787017
AT1G55610 3.0kb downstream 3.0kb downstream 7525   true Chr1: 20776493-20784017
AT1G55610 3.0kb downstream 3.0kb downstream 3000   false Chr1: 20776493-20779492


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0 Pathways

Data Source: KEGG

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Array Expression

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139