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Gene : NAC1 A. thaliana

Gene ID  ? AT1G56010
Brief Description  NAC domain containing protein 1  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? NAC domain containing protein 1 (NAC1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G12977.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1)  Source: TAIR, Jun 30, 2015.
Name  ? NAC domain containing protein 1
  • synonyms:
  • Arabidopsis NAC domain containing protein 22,
  • Arabidopsis NAC domain containing protein 21,
  • ANAC022,
  • anac021

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4 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Our results indicate that auxin induction of miR164 provides a homeostatic mechanism to clear NAC1 mRNA to downregulate auxin signals. 15829603
up-stream regulatory fragment of NAC1 responded to plant hormones 17172049
Molecular mechanisms underlying the cold temperature regulation of flowering time of Arabidopsis are controled by NAC1. 17653269
Data indicate that the structure of NAC transcription factor AtNAC1 monomer contained four alpha-helices and eight beta-sheets. 24570356

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G56010 0.5kb upstream 0.5kb upstream 3211   true Chr1: 20946571-20949781
AT1G56010 0.5kb upstream 0.5kb upstream 500   false Chr1: 20949282-20949781
AT1G56010 0.5kb downstream 0.5kb downstream 3211   true Chr1: 20946071-20949281
AT1G56010 0.5kb downstream 0.5kb downstream 500   false Chr1: 20946071-20946570
AT1G56010 1.0kb upstream 1.0kb upstream 3711   true Chr1: 20946571-20950281
AT1G56010 1.0kb upstream 1.0kb upstream 1000   false Chr1: 20949282-20950281
AT1G56010 1.0kb downstream 1.0kb downstream 3711   true Chr1: 20945571-20949281
AT1G56010 1.0kb downstream 1.0kb downstream 1000   false Chr1: 20945571-20946570
AT1G56010 3.0kb upstream 3.0kb upstream 5711   true Chr1: 20946571-20952281
AT1G56010 3.0kb upstream 3.0kb upstream 3000   false Chr1: 20949282-20952281
AT1G56010 3.0kb downstream 3.0kb downstream 5711   true Chr1: 20943571-20949281
AT1G56010 3.0kb downstream 3.0kb downstream 3000   false Chr1: 20943571-20946570

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139