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Gene : LOS1 A. thaliana

Gene ID  ? AT1G56070
Brief Description  Ribosomal protein S5/Elongation factor G/III/V family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 (LOS1); FUNCTIONS IN: translation factor activity, nucleic acid binding, copper ion binding, translation elongation factor activity; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleolus, chloroplast, plasma membrane, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT3G12915.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.  Source: TAIR, Jun 30, 2015.
Name  ? LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1

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Data Source: NCBI

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G56070 0.5kb upstream 0.5kb upstream 4591   true Chr1: 20967652-20972242
AT1G56070 0.5kb upstream 0.5kb upstream 500   false Chr1: 20971743-20972242
AT1G56070 0.5kb downstream 0.5kb downstream 4591   true Chr1: 20967152-20971742
AT1G56070 0.5kb downstream 0.5kb downstream 500   false Chr1: 20967152-20967651
AT1G56070 1.0kb upstream 1.0kb upstream 5091   true Chr1: 20967652-20972742
AT1G56070 1.0kb upstream 1.0kb upstream 1000   false Chr1: 20971743-20972742
AT1G56070 1.0kb downstream 1.0kb downstream 5091   true Chr1: 20966652-20971742
AT1G56070 1.0kb downstream 1.0kb downstream 1000   false Chr1: 20966652-20967651
AT1G56070 3.0kb upstream 3.0kb upstream 7091   true Chr1: 20967652-20974742
AT1G56070 3.0kb upstream 3.0kb upstream 3000   false Chr1: 20971743-20974742
AT1G56070 3.0kb downstream 3.0kb downstream 7091   true Chr1: 20964652-20971742
AT1G56070 3.0kb downstream 3.0kb downstream 3000   false Chr1: 20964652-20967651

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139