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Gene : TPR5 A. thaliana

Gene ID  ? AT1G56440
Brief Description  Tetratricopeptide repeat (TPR)-like superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-III (TAIR:AT3G17970.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.  Source: TAIR, Jun 30, 2015.
Name  ? tetratricopeptide repeat 5

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G56440 0.5kb upstream 0.5kb upstream 3630   true Chr1: 21138515-21142144
AT1G56440 0.5kb upstream 0.5kb upstream 500   false Chr1: 21141645-21142144
AT1G56440 0.5kb downstream 0.5kb downstream 3630   true Chr1: 21138015-21141644
AT1G56440 0.5kb downstream 0.5kb downstream 500   false Chr1: 21138015-21138514
AT1G56440 1.0kb upstream 1.0kb upstream 4130   true Chr1: 21138515-21142644
AT1G56440 1.0kb upstream 1.0kb upstream 1000   false Chr1: 21141645-21142644
AT1G56440 1.0kb downstream 1.0kb downstream 4130   true Chr1: 21137515-21141644
AT1G56440 1.0kb downstream 1.0kb downstream 1000   false Chr1: 21137515-21138514
AT1G56440 3.0kb upstream 3.0kb upstream 6130   true Chr1: 21138515-21144644
AT1G56440 3.0kb upstream 3.0kb upstream 3000   false Chr1: 21141645-21144644
AT1G56440 3.0kb downstream 3.0kb downstream 6130   true Chr1: 21135515-21141644
AT1G56440 3.0kb downstream 3.0kb downstream 3000   false Chr1: 21135515-21138514

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0 Pathways

Data Source: KEGG

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Expression

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
TrEMBL data set Computationally analysed records, enriched with automatic annotation 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0