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Gene : TCP8 A. thaliana

Gene ID  ? AT1G58100
Brief Description  TCP family transcription factor  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? TCP family transcription factor ; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G35560.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes TCP8, belongs to the TCP transcription factor family known to bind site II elements in promoter regions.  Source: TAIR, Jun 30, 2015.
Name  ? TCP domain protein 8
  • synonyms:
  • AtTCP8

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
TCP proteins are involved in the orchestrated regulation of ICS1 expression, with TCP8 and TCP9 being verified as major representatives. 25702611

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G58100 0.5kb upstream 0.5kb upstream 2358   true Chr1: 21512332-21514689
AT1G58100 0.5kb upstream 0.5kb upstream 500   false Chr1: 21514190-21514689
AT1G58100 0.5kb downstream 0.5kb downstream 2358   true Chr1: 21511832-21514189
AT1G58100 0.5kb downstream 0.5kb downstream 500   false Chr1: 21511832-21512331
AT1G58100 1.0kb upstream 1.0kb upstream 2858   true Chr1: 21512332-21515189
AT1G58100 1.0kb upstream 1.0kb upstream 1000   false Chr1: 21514190-21515189
AT1G58100 1.0kb downstream 1.0kb downstream 2858   true Chr1: 21511332-21514189
AT1G58100 1.0kb downstream 1.0kb downstream 1000   false Chr1: 21511332-21512331
AT1G58100 3.0kb upstream 3.0kb upstream 4858   true Chr1: 21512332-21517189
AT1G58100 3.0kb upstream 3.0kb upstream 3000   false Chr1: 21514190-21517189
AT1G58100 3.0kb downstream 3.0kb downstream 4858   true Chr1: 21509332-21514189
AT1G58100 3.0kb downstream 3.0kb downstream 3000   false Chr1: 21509332-21512331

Proteins

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0 Pathways

Data Source: KEGG

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Expression

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Interactions

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11 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TIGR GO annotations assigned by TIGR Arabidopsis annotation effort 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139