help  | faq  | software  | ARAPORT

Gene : AT1G62020 A. thaliana

Gene ID  ? AT1G62020
Brief Description  Coatomer, alpha subunit  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? Coatomer, alpha subunit; FUNCTIONS IN: structural molecule activity, transporter activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPI vesicle coat, plasma membrane, CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat, conserved site (InterPro:IPR019775), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Coatomer, alpha subunit (InterPro:IPR016391), WD40 repeat, subgroup (InterPro:IPR019781), Coatomer, alpha subunit, C-terminal (InterPro:IPR010714); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT2G21390.1).  Source: TAIR, Jun 30, 2015.

Locus History Displayer

Publication Counts Displayer

0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

Sequence Feature Displayer

Gene Structure Displayer

J Browse Displayer

Overlapping Features Displayer

12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G62020 0.5kb upstream 0.5kb upstream 5038   true Chr1: 22918987-22924024
AT1G62020 0.5kb upstream 0.5kb upstream 500   false Chr1: 22918987-22919486
AT1G62020 0.5kb downstream 0.5kb downstream 5038   true Chr1: 22919487-22924524
AT1G62020 0.5kb downstream 0.5kb downstream 500   false Chr1: 22924025-22924524
AT1G62020 1.0kb upstream 1.0kb upstream 5538   true Chr1: 22918487-22924024
AT1G62020 1.0kb upstream 1.0kb upstream 1000   false Chr1: 22918487-22919486
AT1G62020 1.0kb downstream 1.0kb downstream 5538   true Chr1: 22919487-22925024
AT1G62020 1.0kb downstream 1.0kb downstream 1000   false Chr1: 22924025-22925024
AT1G62020 3.0kb upstream 3.0kb upstream 7538   true Chr1: 22916487-22924024
AT1G62020 3.0kb upstream 3.0kb upstream 3000   false Chr1: 22916487-22919486
AT1G62020 3.0kb downstream 3.0kb downstream 7538   true Chr1: 22919487-22927024
AT1G62020 3.0kb downstream 3.0kb downstream 3000   false Chr1: 22924025-22927024

Proteins

Protein Displayer


Function

Gene Ontology Displayer

0 Pathways

Data Source: KEGG

Gene --> Ontology term

Gene --> Pathways


Expression

Plant Ontology Displayer

Bar Efp Browser Displayer

Array Expression

RNA-seq Expression

Co-expression

Save / Export

 

 

 

 



Interactions

Cytoscape Network Displayer


Homology

Homologue Displayer

Phytomine Ortholog Displayer


Stocks

Alelle Table Displayer

Stock Gene Table Displayer


 

Other

9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016