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Gene : MEF9 A. thaliana

Gene ID  ? AT1G62260
Brief Description  mitochondrial editing factor 9  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? mitochondrial editing factor 9 (MEF9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytidine to uridine editing; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? Encodes MITOCHONDRIAL EDITING FACTOR 9 (MEF9), an E subclass PPR protein required for RNA editing.  Source: TAIR, Jun 30, 2015.
Name  ? mitochondrial editing factor 9

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1 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
MITOCHONDRIAL EDITING FACTOR9 is required for RNA editing of the site nad7-200 in the nad7 mitochondrial mRNA. MEF9 does not affect RNA editing in plastids. [MEF9] 20018598

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G62260 0.5kb upstream 0.5kb upstream 2575   true Chr1: 22997755-23000329
AT1G62260 0.5kb upstream 0.5kb upstream 500   false Chr1: 22999830-23000329
AT1G62260 0.5kb downstream 0.5kb downstream 2575   true Chr1: 22997255-22999829
AT1G62260 0.5kb downstream 0.5kb downstream 500   false Chr1: 22997255-22997754
AT1G62260 1.0kb upstream 1.0kb upstream 3075   true Chr1: 22997755-23000829
AT1G62260 1.0kb upstream 1.0kb upstream 1000   false Chr1: 22999830-23000829
AT1G62260 1.0kb downstream 1.0kb downstream 3075   true Chr1: 22996755-22999829
AT1G62260 1.0kb downstream 1.0kb downstream 1000   false Chr1: 22996755-22997754
AT1G62260 3.0kb upstream 3.0kb upstream 5075   true Chr1: 22997755-23002829
AT1G62260 3.0kb upstream 3.0kb upstream 3000   false Chr1: 22999830-23002829
AT1G62260 3.0kb downstream 3.0kb downstream 5075   true Chr1: 22994755-22999829
AT1G62260 3.0kb downstream 3.0kb downstream 3000   false Chr1: 22994755-22997754

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0 Pathways

Data Source: KEGG

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139