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Gene : ddf2 A. thaliana

Gene ID  ? AT1G63030
Brief Description  Integrase-type DNA-binding superfamily protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? DWARF AND DELAYED FLOWERING 2 (ddf2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G12610.1).  Source: TAIR, Jun 30, 2015.
Curator Summary  ? encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in the reduction of gibberellic acid biosynthesis. This gene is expressed in all tissues examined, but most abundantly expressed in rosette leaves and stems. Overexpression of DDF1, a putative paralog of this gene, also reduces gibberellic acid biosynthesis and makes the plants more tolerant to high-salinity levels.  Source: TAIR, Jun 30, 2015.
Name  ? DWARF AND DELAYED FLOWERING 2

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2 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Annotation PubMed Id
Data indicate that the transcript levels of HAK5 and four transcriptin factor genes DDF2, JLO, bHLH121 and TFII_A were highly up-regulated in response to both -K and salt stress. 23825216
Data indicate that both transcription factors DWARF AND DELAYED FLOWERING1 (DDF1) and DDF2 are under selective constraint. 26103993

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G63030 0.5kb upstream 0.5kb upstream 1523   true Chr1: 23367394-23368916
AT1G63030 0.5kb upstream 0.5kb upstream 500   false Chr1: 23368417-23368916
AT1G63030 0.5kb downstream 0.5kb downstream 1523   true Chr1: 23366894-23368416
AT1G63030 0.5kb downstream 0.5kb downstream 500   false Chr1: 23366894-23367393
AT1G63030 1.0kb upstream 1.0kb upstream 2023   true Chr1: 23367394-23369416
AT1G63030 1.0kb upstream 1.0kb upstream 1000   false Chr1: 23368417-23369416
AT1G63030 1.0kb downstream 1.0kb downstream 2023   true Chr1: 23366394-23368416
AT1G63030 1.0kb downstream 1.0kb downstream 1000   false Chr1: 23366394-23367393
AT1G63030 3.0kb upstream 3.0kb upstream 4023   true Chr1: 23367394-23371416
AT1G63030 3.0kb upstream 3.0kb upstream 3000   false Chr1: 23368417-23371416
AT1G63030 3.0kb downstream 3.0kb downstream 4023   true Chr1: 23364394-23368416
AT1G63030 3.0kb downstream 3.0kb downstream 3000   false Chr1: 23364394-23367393

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0 Pathways

Data Source: KEGG

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9 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
GeneRIF Concise phrase describing gene function and publication associated with NCBI Gene records 8/12/2016