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Gene : AT1G63480 A. thaliana

Gene ID  ? AT1G63480
Brief Description  AT hook motif DNA-binding family protein  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956), A.T hook-like (InterPro:IPR020478); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT1G63470.1).  Source: TAIR, Jun 30, 2015.
  • synonyms:
  • AHL12,
  • AT-hook motif nuclear localized protein 12

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G63480 0.5kb upstream 0.5kb upstream 3177   true Chr1: 23539557-23542733
AT1G63480 0.5kb upstream 0.5kb upstream 500   false Chr1: 23542234-23542733
AT1G63480 0.5kb downstream 0.5kb downstream 3177   true Chr1: 23539057-23542233
AT1G63480 0.5kb downstream 0.5kb downstream 500   false Chr1: 23539057-23539556
AT1G63480 1.0kb upstream 1.0kb upstream 3677   true Chr1: 23539557-23543233
AT1G63480 1.0kb upstream 1.0kb upstream 1000   false Chr1: 23542234-23543233
AT1G63480 1.0kb downstream 1.0kb downstream 3677   true Chr1: 23538557-23542233
AT1G63480 1.0kb downstream 1.0kb downstream 1000   false Chr1: 23538557-23539556
AT1G63480 3.0kb upstream 3.0kb upstream 5677   true Chr1: 23539557-23545233
AT1G63480 3.0kb upstream 3.0kb upstream 3000   false Chr1: 23542234-23545233
AT1G63480 3.0kb downstream 3.0kb downstream 5677   true Chr1: 23536557-23542233
AT1G63480 3.0kb downstream 3.0kb downstream 3000   false Chr1: 23536557-23539556

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0 Pathways

Data Source: KEGG

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
IntAct interactions data set Curated binary and complex protein-protein interactions for Arabidopsis thaliana 8/02/2016
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139