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Gene : EMB2813 A. thaliana

Gene ID  ? AT1G67320
Brief Description  DNA primase, large subunit family  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238).  Source: TAIR, Jun 30, 2015.
Name  ? EMBRYO DEFECTIVE 2813

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G67320 0.5kb upstream 0.5kb upstream 4323   true Chr1: 25205279-25209601
AT1G67320 0.5kb upstream 0.5kb upstream 500   false Chr1: 25209102-25209601
AT1G67320 0.5kb downstream 0.5kb downstream 4323   true Chr1: 25204779-25209101
AT1G67320 0.5kb downstream 0.5kb downstream 500   false Chr1: 25204779-25205278
AT1G67320 1.0kb upstream 1.0kb upstream 4823   true Chr1: 25205279-25210101
AT1G67320 1.0kb upstream 1.0kb upstream 1000   false Chr1: 25209102-25210101
AT1G67320 1.0kb downstream 1.0kb downstream 4823   true Chr1: 25204279-25209101
AT1G67320 1.0kb downstream 1.0kb downstream 1000   false Chr1: 25204279-25205278
AT1G67320 3.0kb upstream 3.0kb upstream 6823   true Chr1: 25205279-25212101
AT1G67320 3.0kb upstream 3.0kb upstream 3000   false Chr1: 25209102-25212101
AT1G67320 3.0kb downstream 3.0kb downstream 6823   true Chr1: 25202279-25209101
AT1G67320 3.0kb downstream 3.0kb downstream 3000   false Chr1: 25202279-25205278

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4 Pathways

Data Source: KEGG

Identifier Name
01100 Metabolic pathways
00240 Pyrimidine metabolism
00230 Purine metabolism
03030 DNA replication

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Expression

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10 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from UniProt GO annotations assigned by UniProt 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0
KEGG pathways data set Wiring diagrams of molecular interactions, reactions, and relations 79.0
BioGRID interaction data set Curated set of genetic and physical interactions for Arabidopsis thaliana 3.4.139