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Gene : LBD42 A. thaliana

Gene ID  ? AT1G68510
Brief Description  LOB domain-containing protein 42  Source: Araport11 (06/2016).
Is Obsolete?  false
Computational Description  ? LOB domain-containing protein 42 (LBD42); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 41 (TAIR:AT3G02550.1).  Source: TAIR, Jun 30, 2015.
Name  ? LOB domain-containing protein 42

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0 GeneRIFs (Gene References Into Functions)

Data Source: NCBI

Genomics

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12 Flanking Regions

Flank size: from most upstream transcription start site, or most downstream transcription stop site

Region Name Flank Size Direction Length Gene Included? Chromosome Location
AT1G68510 0.5kb upstream 0.5kb upstream 2122   true Chr1: 25706382-25708503
AT1G68510 0.5kb upstream 0.5kb upstream 500   false Chr1: 25706382-25706881
AT1G68510 0.5kb downstream 0.5kb downstream 2122   true Chr1: 25706882-25709003
AT1G68510 0.5kb downstream 0.5kb downstream 500   false Chr1: 25708504-25709003
AT1G68510 1.0kb upstream 1.0kb upstream 2622   true Chr1: 25705882-25708503
AT1G68510 1.0kb upstream 1.0kb upstream 1000   false Chr1: 25705882-25706881
AT1G68510 1.0kb downstream 1.0kb downstream 2622   true Chr1: 25706882-25709503
AT1G68510 1.0kb downstream 1.0kb downstream 1000   false Chr1: 25708504-25709503
AT1G68510 3.0kb upstream 3.0kb upstream 4622   true Chr1: 25703882-25708503
AT1G68510 3.0kb upstream 3.0kb upstream 3000   false Chr1: 25703882-25706881
AT1G68510 3.0kb downstream 3.0kb downstream 4622   true Chr1: 25706882-25711503
AT1G68510 3.0kb downstream 3.0kb downstream 3000   false Chr1: 25708504-25711503

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0 Pathways

Data Source: KEGG

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8 Data Sets

Name Description Version
BAR Annotations Lookup Mapping(s) between AGI locus and Affy Probeset identifier 10/08/2013
Genome Annotation Araport11 protein-coding, non-coding and transposable element genes Araport11 (06/2016)
RNA-seq expression Measure of gene expression levels (Transcripts per Million, TPM) quantified by Salmon Araport11 (06/2016)
PubMed to gene mapping Curated associations between publications and NCBI Gene records 8/12/2016
GO Annotation from TAIR GO annotations assigned by TAIR 8/01/2016
PO Annotation from TAIR Literature-based annotations of genes to Plant Ontology (PO) terms 06/30/2015
Swiss-Prot data set High-quality, manually annotated, non-redundant protein sequence database 2016_07
Panther data set PANTHER paralogs from Arabidopsis 11.0